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Programs

adjunct appointments | editorial boards | PC chair and steering committees | program committees | journal reviewing | keynotes | invited talks | awards | research statement

ADJUNCT APPOINTMENTS

  • Associate Professor (Adjunct), Department of Biochemistry, National University of Singapore (NUS), Singapore. 2010 - present.

  • Associate Professor (Adjunct), School of Computer Engineering, Nanyang Technological University (NTU), Singapore. 2003 - 2010.

  • Research Fellow (Adjunct), Singapore Eye Research Institute (SERI), National University of Singapore, Singapore. 2007-2010.

EDITORIAL BOARDS

  • Co-Editor-in-Chief, International Journal of Knowledge Discovery in Bioinformatics (IJKDB), IGI Publishing, 2010
  • Associate Editor, "Advances in Bioinformatics and Computational Biology" (ABCB) book series, Imperial College Press, London, 2004-present.
  • Editorial Board Member, International Journal of Data Mining and Bioinformatics (IJDMB), Inderscience Publishers, 2006-present.

PC CHAIRS AND STEERING COMMITTEES

  • AINA-2011: Track Co-chair for Distributed Database and Data Mining, 25th International Conference on Advanced Information Networking and Applications
  • ICDM-2010 Workshop on Biological Data Mining and its Applications in Healthcare: PC Co-chair
  • GIW-2008: PC Co-chair, 19th International Conference on Genome Informatics
  • GIW-2007: PC Co-chair, 18th International Conference on Genome Informatics
  • LBM: Steering Committee member, International Symposium on Languages in Biology and Medicine (2007 - )

PROGRAM COMMITTEES

  • BIBM-2010: IEEE International Conference on Bioinformatics & Biomedicine, December 18-21, 2010, Hong Kong.
  • GIW-2010: The 21st International Conference on Genome Information, December 16-18, 2010, Hangzhou, China.
  • ICDM-2010: The 10th IEEE International Conference on Data Mining, December 13-17, 2010, Sydney, Australia.
  • ACML-2010: The 2nd Asian Conference on Machine Learning, November 8-10, 2010, Tokyo, Japan.
  • SMBM-2010: The 4th Symposium on Semantic Mining in Biomedicine, Hinxton, Cambridgeshire, UK, October 25-26 2010.
  • ITBAM-2010: The 1st International Conference on Information Technology in Bio- and Medical Informatics, August 30-September 3, 2010, Bilbao, Spain.
  • DILS-2010: 7th International Conference on Data Integration in the Life Sciences, August 25-27, 2010, Gothenburg, Sweden.
  • GrC-2010: IEEE International Conference on Granular Computing, August 14-16, 2010, Silicon Valley, California, USA.
  • ISMB-2010: The 18th International Conference on Intelligent Systems for Molecular Biology, July 11-13, 2010, Boston, Massachusetts, USA.
  • IBW-2010: The 8th International Bioinformatics Workshop, June 4-6, 2010, Wuhan, China.
  • EvoBIO-2010: 8th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, April 7-9, 2010, Istanbul, Turkey.
  • BICoB-2010: 2nd International Conference on Bioinformatics and Computational Biology, March 24-26, 2010, Honolulu, Hawaii, USA.
  • Sixth International Symposium on Integrative Bioinformatics, March 22-24, 2010, Cambridge, United Kingdom.
  • GIW-2009: The 20th International Conference on Genome Informatics, December 14-16, 2009, Yokohama, Japan.
  • ICMLA-2009: The 8th International Conference on Machine Learning and Applications, December 13-15, 2009, Miami, USA.
  • 1st International Workshop on Social Networks Interoperability, at the 4th Asian Semantic Web Conference, December 6-9, 2009, Shanghai, SChina.
  • LBM2009: Symposium on Languages in Biology and Medicine, Novemebr 12-13, 2009, Jeju Island, South Korea.
  • CNIKM'09:ACM CIKM-2009 Workshop - Complex Networks meet Information & Knowledge Management, November 6, 2009, Hong Kong.
  • ACML-2009: The 1st Asian Conference on Machine Learning, November 2-4, 2009, Nanjing, China.
  • DMBD 2009: International Workshop on Data Mining for Biomarker Discovery, Nov 1-4, 2009, Washington D.C., USA.
  • BIBM 2009: IEEE International Conference on Bioinformatics & Biomedicine Nov 1-4, 2009, Washington D.C., USA.
  • DILS 2009: The 6th International Workshop on Data Integration in the Life Sciences, July 20-22, 2009, Manchester, United Kingdom.
  • ISMB/ECCB-2009: The 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology, June 27-July 2, 2009, Stockholm, Sweden.
  • EvoBIO-2009: 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, April 15-17, 2009, Tübingen, Germany.
  • ICMLA-2008: The 7th International Conference on Machine Learning and Applications, December 11-13, 2008, San Diego, USA.
  • BIBM-2008: IEEE International Conference on Bioinformatics and Biomedicine, November 7-9, 2008, Philadelphia, USA.
  • PRIB-2008: Third IAPR International Workshop on Pattern Recognition in Bioinformatics, October 15-17, 2008, Melbourne, Australia.
  • ECCB-2008:European Conference on Computational Biology, September 22-26, 2008, Cagliari, Sardinia-Italy.
  • SMBM-2008:Third International Symposium on Semantic Mining in Biomedicine, September 1-3, 2008, Turku, Finland.
  • Fifth International Symposium on Integrative Bioinformatics, August 20-22, 2008, Leucorea Wittenberg, Germany.
  • BIRD-2008: Second International Conference on Bioinformatics Research and Development, July 7-9, 2008, Vienna, Germany
  • AWIC-2008: Sixth Atlantic Web Intelligence Conference, June 30-July 03, 2008, Cape Town, South Africa
  • EvoBIO-2008: 6th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, March 26-28, 2008, Napoli, Italy.
  • GrC 2007 : IEEE International Conference on Granular Computing, California, USA, November 2-4, 2007
  • BIBE-2007: IEEE 7th International Symposium on BioInformatics and BioEngineering, October 14-17, 2007, USA.
  • FBIT-2007: Frontiers in the Convergence of Bioscience and Information technologies, October 11-13, 2007, Korea.
  • PRIB-2007: Second IAPR International Workshop on Pattern Recognition in Bioinformatics, October 1-2, 2007, Singapore.
  • ISMB/ECCB-2007: 15th Annual International Conference on Intelligent Systems for Molecular Biology & 6th European Coneference on Computational Biology, July 21-25, 2007, Austria.
  • BIRD-2007: First International Conference on Bioinformatics Research and Development, April 2007, Berlin, Germany.
  • ESCAPE-2007: First International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies, April 2007, Hangzhou, China.
  • GIW-2006 : 17th International Conference on Genome Informatics, Yokohama, December, 2006.
  • PKDD06: Data and Text Mining for Integrative Biology Workshop, in the 10th European Conference on Principles and Practice of Knowledge Discovery in Databases, Berlin, 18-22 September 2006.
  • ISMB06 : 14th Annual International Conference on Intelligent Systems for Molecular Biology, Fortaleza, Brazil, August 6-10 2006.
  • ICCSB2006 : First International Conference on Computational Systems Biology, Shanghai, China, July 20-23, 2006.
  • RECOMB (satellite) : 3rd RECOMB Satellite Conference on Regulatory Genomics Singapore, July 17-18, 2006.
  • Workshop on BioAlgorithmics (Local Organizing Committee), Institute of Mathematical Science, NUS, Singapore, 12-14 July, 2006.
  • SCBB06 : Symposium of Computations in Bioinformatics and Bioscience (SCBB06), HangZhou, China, June 22-26 2006.
  • GrC 2006 : IEEE International Conference on Granular Computing, Atlanta, USA, May 10-12, 2006
  • PAKDD 2006 - KDLL : Workshop on Knowledge Discovery in Life Science Literature, in 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining, Singapore, 9-12 April 2006.
  • PAKDD 2006 - BioDM : Workshop on Data Mining for Biomedical Applications, in 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining, Singapore, 9-12 April 2006.
  • GIW-2005 : 16th International Conference on Genome Informatics, Yokohama, December 19-21, 2005.
  • LBM2005: First International Symposium on Languages in Biology and Medicine, Novemebr 24-26, 2005.
  • BIOINFO2005 : Joint conference for INCOB2005, AASBi2005 and KSBi2005 in Busan, South Korea, September 22-24, 2005. Regional Chair.
  • SMBM 2005 : 1st International Symposium on Semantic Mining in Biomedicine, European Bioinformatics Institute (EBI) in Hinxton, Cambridge, UK, April 10-13, 2005.
  • ICCSA 2005 - DMBIO : 1st International Workshop on Data Mining and Bioinformatics (in conjunction with the 2005 International Conference on Computational Science and Its Applications), Singapore, May 9-12, 2005.
  • APBC 2005 : 3rd Asia Pacific Bioinformatics Conference, Singapore, 17-21 January, 2005.
  • GIW 2004 : 15th International Conference on Genome Informatics, Yokohama, Japan, December 13-15, 2004.
  • BioLINK 2004 : BioLINK Workshop, HLT/NAACL 2004, Boston, USA, May 6, 2004.
  • IJCNLP-2004 : Text Mining in Biomedicine Thematic Session, 1st International Joint Conference of Natural Language Processing, Hainan, China, March 22-24, 2004.
  • ISMB 2003 : Text Mining and Protein Interactions, ISMB2003.

JOURNAL REVIEWING

  • Bioinformatics journal (2003-present)
  • BMC Journal of Bioinformatics (2003-present)
  • BMC Journal of Microbiology (2005)
  • BMC Journal of Genomics (2006, 2008)
  • Computer Methods and Programs in Biomedicine (2007-present)
  • Journal of Bioinformatics and Computational Biology (JCBC) (2003-present)
  • IEEE Intelligent Systems (2005)
  • ACM Transactions on Asian Language Information Processing - Special Issue on Text Mining and Management in Biomedicine (2005)
  • IEEE Transactions on Knowledge and Data Engineering - Special Issue on Mining Biological Data (2004)
  • Journal of Biomedical Informatics (2004, Special Issue on Natural Language Processing in Biomedicine: Aims, Achievements and Challenges)
  • IEEE Transactions on Circuits and Systems I (TCAS-I) (2006)
  • In Silico Biology (ISB) (2006)
  • Journal of Biomolecular Structure & Dynamics (2006)
  • IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) (2007)

CONFERENCE KEYNOTES

  • "Unraveling the Common Denominators in Protein-Protein Interaction Networks", in the International Symposium on Computational Biology and Bioinformatics (ISBB06), Bhubaneshwar, India, 15-17 December 2006.


  • "Unraveling Multi-Domain Dependencies in Protein-Protein Interactions", in the First International Conference on Computational Systems Biology (ICCSB-2006), Shanghai, 20-23 July 2006.

INVITED TALKS

  • "Intelligent Geospatial Data Mining", invited talk, Geospatial Information and Technology Exchange Forum (GITEX), Singapore Land Authority, 30 April 2010.
  • "Medical Applications of Data Mining ", invited talk, Chiba University, Japan, 30 March 2010.
  • "Searching for Rising Stars in Researchers' Collaboration Networks", invited talk, Seoul National University, Korea, 13 November 2009.
  • "Searching for Rising Stars in Bibliography Networks", invited research presentation for the Workshop on Mining User-Generated Content, Singapore Management University, 8 August 2009.
  • "Unraveling the Building Blocks of Protein-Protein Interaction Networks", invited seminar, Institute for Chemical Research, Kyoto University, Japan, 20 April 2009.
  • "Deciphering Protein-Protein Interactions - Experimentally and Computationally", invited guest lecture, School of Biological Sciences, Nanyang Technological University, Singapore, 10 September 2008.
  • "Network Data Mining", invited lecture for A Short Course on Introduction to Data Mining, organized by the Pattern Recognition and Machine Intelligence Association (PREMIA), School of Computer Science, National University of Singapore, Singapore, 28 June 2008.
  • "Data Mining for Real", invited guest lecture, School of Computer Science, National University of Singapore, Singapore, 4 April 2008.
  • "Computing Protein-Protein Interactions", invited guest lecture, School of Biological Sciences, Nanyang Technological University, Singapore, 29 August 2007.
  • "Mining the Protein-Protein Interaction Networks", invited speaker for the Bioinformatics for Biologists seminar series by the Office of Life Sciences, National University of Singapore, 30 January 2007.
  • "Fishing for Knowledge in Real-World Networks", invited speaker at the Knowledge Management Workshop, Exploit Technologies, Singapore, 10 January 2007.
  • "Uncovering the Biological Building Blocks for Protein Interaction Networks", invited plenary speaker for the 8th National Symposium on Biology, Malaysia, 5-7 December 2006.
  • "Mining for Gold in Mountains of Unstructured Text", invited speaker for the Identifying and Managing Unstructured Information Conference, The Ark Group, Singapore, 26-28 April 2006.
  • "Extracting and Exploiting Protein-Protein Contrasts from Biomedical Literature", invited speaker for the CHIME Text Processing Seminar, School of Computing, National University of Singapore, 1 Mar 2006.
  • "BioContrasts: Extracting and Exploiting Protein-Protein Contrasts from Biomedical Literature", invited speaker for the First International Symposium on Languages in Biology and Medicine, KAIST, Korea, 26 Nov 2005.
  • "Computational Purification of Protein Interactomes Using Network Topological Metrics", invited lecture for the BIOINFO2005 AASBi Conference, Busan, Korea, 23 September 2005.
  • "Detecting False Positives and False Negatives in Protein Interactome using Network Topology", invited lecture for the NTU BIRC Workshop on Computational Analysis of Proteomics Data, NTU, Singapore, 16 June 2005.
  • "Smart Bio-Laboratories of the Future", invited paper for ISCAS 2005: Life Science Systems, Kobe, Japan, 26 May 2005.
  • "Detecting False Positives and False Negatives in Protein Interactome using Network Topology", invited seminar for IMS Workshop on Data Analysis and Data Mining in Proteomics, NUS, Singapore, 12 May 2005.
  • "A Better Tomorrow with Bioinformatics", invited lecture for ACJC Symposium, ACJC, Singapore, 15 Mar 2005.
  • "Enabling On-the-Go Equipment Access in a Smart Bio-Laboratory", invited presentation for Digital Convergence Conference, Singapore, 27 Sep 2004.
  • "Literature Mining for Interaction Pathway Discovery", proposal presentation for TREC Genomics Pre-Track Presentation, JDCL-2002, Portland, USA, 18 Jul 2002.
  • "Literature Mining for Interaction Pathway Discovery", invited seminar for IMS Workshop on Post-genome Knowledge Discovery, NUS, Singapore, 30 May 2002.
  • "Pathweaver: System, Studies, Results, Collaboration", Invited Workshop on NLP and Ontology in Biology, Tokyo, Japan, 20 Feb 2002.
  • "Laboratories of the Future: Accelerating Life Sciences Research with Leading-edge IT", invited speaker at the National Library, Singapore, 16 Oct 2001.
  • "Decoding the Book of Life: Sequences, Genotypes, A, C, G, and T", invited speaker at the National Library, Singapore, 20 Mar 2001.

AWARDS

  • Best Poster Award, The 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008) "Mining for Domain Dependency Sets from Protein Interactions ", 30 March - 2 April, 2008.

  • Best Paper Award, The 16th International Conference on Genome Informatics (GIW 2005) "Interaction Graph Mining for Protein Complexes Using Local Clique Merging", December 19-21, 2005.

BIOINFORMATICS RESEARCH STATEMENT
To demonstrate that techniques in computation and information sciences can be as useful as laboratory innovations for solving key problems in modern molecular biology:

  • Data generation, the focus in the genome era (1993-2000):
    My research was focused on the enhancement of data throughput with integrated computational methods. Key previous research achievements included my thesis work on computational analysis of microsatellite genotyping data, which produced the TrueAllele software used by DECODE Genetics to genotype the Icelandic population, and my work at Smithkline Beecham (UK) and DNA Sciences (US) that addressed practical issues of production laboratory information management systems (LIMS);

  • Knowledge discovery, the new focus in the post-genome era (2001-present):
    My research now focuses on biomedical data mining and information extraction beyond single genes into complex interaction networks of proteins and other molecules. Current research focuses on in silico approaches to discover and validate bio-molecular interactions and pathways using scientific modeling, literature mining, and integration of heterogeneous data for knowledge discovery.
         

Disclaimer: I am personally responsible for any content and opinion posted on this homepage. The Institute for Infocomm Research is not responsible for any contents found on this homepage or any opinion expressed herein.